Dobson L, Szekeres LI, Gedán C, Langó T, Zeke A and Tusnády GE (2023) TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures Nucleic Acids Research , .
Zeke A, Takács T, Sok P, Németh K, Kirsch K, Egri P, Póti ÁL, Bento I, Tusnády GE and Reményi A (2022) Structural insights into the pSer/pThr dependent regulation of the SHP2 tyrosine phosphatase in insulin and CD28 signaling Nature Communication13, 5439.
Bakos É, Németh O, Kucsma N, Tőkési N, Stieger B, Rushing E, Tőkés A, Kele P, Tusnády GE and Özvegy-Laczka Cs (2022) Cloning and characterization of a novel functional organic anion transporting polypeptide 3A1 isoform highly expressed in the human brain and testis Frontiers in Pharmacology13, 958023.
Dobson L and Tusnády GE (2021) MemDis: Predicting Disordered Regions in Transmembrane Proteins Int. J. Mol. Sci.22, 12270.
Czimer D, Porok K, Csete D, Gyüre Zs, Lavró V, Fülöp K, Chen Z, Gyergyák H, Tusnády GE, Burgess SM, Mócsai A, Váradi A and Varga M (2021) A New Zebrafish Model for Pseudoxanthoma Elasticum Front Cell Dev Biol9, 628699.
Dobson L, Zeke A and Tusnády GE (2021) PolarProtPred: Predicting apical and basolateral localization of transmembrane proteins using putative short linear motifs and deep learning. Bioinformatics , btab480. If.: ---
Zeke A, Dobson L, Szekeres LI, Langó T and Tusnády GE (2021) PolarProtDb: A Database of Transmembrane and Secreted Proteins showing Apical-Basal Polarity J Mol Biol433, 166705. If.: ---
Tálas A, Huszár K, Kulcsár PI, Varga JK, Varga É, Tóth E, Welker Zs, Erdős G, Pach PF, Welker Á, Györgypál Z, Tusnády GE and Welker E (2021) A method for characterizing Cas9 variants via a one-million target sequence library of self-targeting sgRNAs Nucleic Acids Res49, e31. If.: ---
Kozák E, Szikora B, Iliás A, Jani PK, Hegyi Z, Matula Zs, Dedinszki D, Tőkési N, Fülöp K, Pomozi V, Várady Gy, Bakos É, Tusnády GE, Kacskovics I and Váradi A (2020) Creation of the first monoclonal antibody recognizing an extracellular epitope of hABCC6 FEBS Lett595, 789-798. If.: ---
Bakos É, Tusnády GE, Német O, Patik I, Magyar C, Németh K, Kele P and Özvegy- Laczka C (2020) Synergistic transport of a fluorescent coumarin probe marks coumarins as pharmacological modulators of Organic anion-transporting polypeptide, OATP3A1 Biochem Pharmacol. , .
Langó T, Pataki ZG, Turiák L, Ács A, Varga JK, Várady, G, Kucsma, N, Drahos, L and Tusnády GE (2020) Partial Proteolysis Improves the Identification of the Extracellular Segments of Transmembrane Proteins by Surface Biotinylation Scientific Reports10, 8880. If.: ---
Csizmadia, G, Farkas, B, Katona, E, Tusnády, GE and Hegedűs, T (2020) Using MemBlob to Analyze Transmembrane Regions Based on Cryo-EM Maps. Methods Mol Biol.2112, 123-30.
Farkas, B, Csizmadia, G, Katona, E, Tusnady, GE and Hegedűs, T (2020) MemBlob database and server for identifying transmembrane regions using cryo-EM maps Bioinformatics36, 2595-98. If.: ---
Vargja, JK and Tusnady, GE (2019) The TMCrys server for supporting crystallization of transmembrane proteins. Bioinformatics35, 4203-4. If.: 5.481
Muller, A, Lango, T, Turiak, L, Acs, A, Varady, G, Kucsma, N, Drahos, L and Tusnady, GE (2019) Covalently modified carboxyl side chains on cell surface leads to a novel method toward topology analysis of transmembrane proteins Scientific Reports9, 15729. If.: ---
Dobson, L, Meszaros, B and Tusnady, GE (2018) Structural Principles Governing Disease Causing Germline Mutations. J Mol BiolS0022-2836, 31101-X. If.: ---
Barath, D, Jaksa-Czotter, N, Molnar, J, Varga, T, Balassy, J, Szabo, LK, Kirilla, Z, Tusnady, GE, Preininger, E and Varallyay, E (2018) Small RNA NGS Revealed the Presence of Cherry Virus A and Little Cherry Virus 1 on Apricots in Hungary. Viruses10, E318.
Varga J and Tusnady, GE (2018) TMCrys: predict propensity of success for transmembrane protein crystallization. Bioinformatics , . If.: 5.481
Fichó E, Reményi I, Simon I and Mészáros B (2017) MFIB: a repository of protein complexes with mutual folding induced by binding Bioinformatics33, 3682-4. If.: 5.481
Pipek O, Ribli D, Molnar J, Poti A, Krzystanek M, Bodor A, Tusnady GE, Szallas Z, Csabai I and Szuts D (2017) Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut. BMC Bioinformatics18, 73. If.: 2.435
Lango T, Rona G, Hunyadi-Gulyas E, Turiak L, Varga J, Dobson L, Varady Gy, Drahos L, Vertessy BG, Medzihradszky FK, Szakacs G and Tusnady GE (2017) Identification of extracellular segments by mass spectrometry improves topology prediction of transmembrane proteins Scientific Reports7, 42610. If.: 5.228
Varga J, Dobson L, Remenyi I and Tusnady GE (2017) TSTMP: target selection for structural genomics of human transmembrane proteins. Nucleic Acids Res45, D325-330. If.: 9.202
Szikriszt B, Poti A, Pipek O, Krzystanek M, Kanu N, Molnar J, Ribli D, Szeltner Z, Tusnady GE, Csabai I, Szallasi Z, Swanton C and Szuts D (2016) A comprehensive survey of the mutagenic impact of common cancer cytotoxics. Genome Biology17, 99. If.: 11.313
Varga J, Dobson L and Tusnady GE (2016) TOPDOM: database of conservatively located domains and motifs in proteins. Bioinformatics32, 2725-2726. If.: 5.552
Czotter N, Szabo E, Molnar J, Kocsis L, Deak T, Bisztray Gy, Tusnady GE, Burgyan J and Varallyay E (2016) FIRST DESCRIPTION OF GRAPEVINE SYRAH VIRUS 1 IN VINEYARDS OF HUNGARY Journal of Plant Pathology1, 1. If.: ---
Molnar J, Szakacs G and Tusnady GE (2016) Characterization of Disease-Associated Mutations in Human Transmembrane Proteins. PLoS One11, e0151760. If.: 3.057
Csernak E, Molnar J, Tusnady GE and Toth E (2016) Application of Targeted Next-generation Sequencing, TruSeq Custom Amplicon Assay for Molecular Pathology Diagnostics on Formalin-fixed and Paraffin-embedded Samples. Appl Immunohistochem Mol Morphol , . If.: 1.553
Calcutt MJ, Szikriszt B, Poti A, Molnar J, Gervai JZ, Tusnady GE, Foecking MF and Szuts D (2015) Genome Sequence Analysis of Mycoplasma sp. HU2014, Isolated from Tissue Culture. Genome Announc3, If.: ---
Kozma D and Tusnady GE (2015) TMFoldWeb: a web server for predicting transmembrane protein fold class. Biol Direct10, 54. If.: 3.016
Tusnady GE, Dobson L and Tompa P (2015) Disordered regions in transmembrane proteins. Biochim Biophys Acta1848, 2839-48. If.: 3.687
Kozma D and Tusnady GE (2015) TMFoldRec: a statistical potential-based transmembrane protein fold recognition BMC Bioinformatics16, 201. If.: 2.435
Dobson L, Remenyi I and Tusnady GE (2015) CCTOP: a Consensus Constrained TOPology prediction web server. Nucleic Acids Res43, W408-12. If.: 9.202
Kiss K, Kucsma N, Brozik A, Tusnady GE, Bergam P, van Niel G and Szakacs G (2015) Role of the N-terminal transmembrane domain in the endo-lysosomal targeting and Biochem J467, 127-39. If.: 3.562
Molnar J, Poti A, Pipek O, Krzystanek M, Kanu N, Swanton C, Tusnady GE, Szallasi Z, Csabai I and Szuts D (2014) The genome of the chicken DT40 bursal lymphoma cell line. G3 (Bethesda)4, 2231-40. If.: 3.198
Molnar J, Nagy T, Steger V, Toth G, Marincs F and Barta E (2014) Genome sequencing and analysis of Mangalica, a fatty local pig of Hungary. BMC Genomics15, 761. If.: 4.3
Kozma D, Simon I and Tusnady GE (2013) PDBTM: Protein Data Bank of transmembrane proteins after 8 years. Nucleic Acids Res41, D524-9. If.: 8.808
Fodor E, Zsigmond A, Horvath B, Molnar J, Nagy I, Toth G, Wilson SW and Varga M (2013) Full transcriptome analysis of early dorsoventral patterning in zebrafish. PLoS One8, e70053. If.: 3.534
Marincs F, Molnar J, Toth G, Steger V and Barta E (2013) Introgression and isolation contributed to the development of Hungarian Mangalica pigs from a particular European ancient bloodline. Genet Sel Evol45, 22. If.: ---
Molnar J, Toth G, Steger V, Zsolnai A, Janosi A, Mohr A, Szanto-Egesz R, Toth P, Micsinai A, Ratky J and Marincs F (2013) Mitochondrial D-loop analysis reveals low diversity in Mangalica pigs and their relationship to historical specimens. J Anim Breed Genet130, 312-20. If.: ---
Kozma D, Simon I and Tusnady GE (2012) CMWeb: an interactive on-line tool for analysing residue-residue contacts and Nucleic Acids Res40, W329-33. If.: 8.278
Tusnady GE and Simon I (2010) Topology prediction of helical transmembrane proteins: how far have we reached? Curr Protein Pept Sci11, 550-61. If.: 3.83
Steger V, Molnar A, Borsy A, Gyurjan I, Szabolcsi Z, Dancs G, Molnar J, Papp P, Nagy J, Puskas L, Barta E, Zomborszky Z, Horn P, Podani J, Semsey S, Lakatos P and Orosz L (2010) Antler development and coupled osteoporosis in the skeleton of red deer Cervus elaphus: expression dynamics for regulatory and effector genes. Mol Genet Genomics284, 273-87. If.: ---
Farrell KB, Tusnady GE and Eiden MV (2009) New structural arrangement of the extracellular regions of the phosphate J Biol Chem284, 29979-87. If.: 8.2
Varadi A, Tusnady GE, Bakos E and Sarkadi B (1998) Membrane topology of the human multidrug resistance-associated protein (MRP) and Cytotechnology27, 71-9. If.: 0.616
Tusnady GE, Kalmar L, Hegyi H, Tompa P and Simon I (2008) TOPDOM: database of domains and motifs with conservative location in Bioinformatics24, 1469-70. If.: 4.328
Aranyi T and Tusnady GE (2007) BiSearch: ePCR tool for native or bisulfite-treated genomic template. Methods Mol Biol402, 385-402. If.: ---
Tusnady GE, Kalmar L and Simon I (2008) TOPDB: topology data bank of transmembrane proteins. Nucleic Acids Res36, D234-9. If.: 6.878
Aranyi T, Varadi A, Simon I and Tusnady GE (2006) The BiSearch web server. BMC Bioinformatics7, 431. If.: 3.617
Tusnady GE, Sarkadi B, Simon I and Varadi A (2006) Membrane topology of human ABC proteins. FEBS Lett580, 1017-22. If.: 7.7
Magyar C, Gromiha MM, Pujadas G, Tusnady GE and Simon I (2005) SRide: a server for identifying stabilizing residues in proteins. Nucleic Acids Res33, W303-5. If.: 7.552
Tusnady GE, Simon I, Varadi A and Aranyi T (2005) BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes. Nucleic Acids Res33, e9. If.: 7.552
Tusnady GE, Dosztanyi Z and Simon I (2005) PDB_TM: selection and membrane localization of transmembrane proteins in the Nucleic Acids Res33, D275-8. If.: 7.552
Tusnady GE, Dosztanyi Z and Simon I (2005) TMDET: web server for detecting transmembrane regions of proteins by using their Bioinformatics21, 1276-7. If.: 6.019
Tusnady GE, Dosztanyi Z and Simon I (2004) Transmembrane proteins in the Protein Data Bank: identification and Bioinformatics20, 2964-72. If.: 5.742
Gardy JL, Spencer C, Wang K, Ester M, Tusnady GE, Simon I, Hua S, deFays K, Lambert C, Nakai K and Brinkman FS (2003) PSORT-B: Improving protein subcellular localization prediction for Gram-negative Nucleic Acids Res31, 3613-7. If.: 6.575
Dosztanyi Z, Magyar C, Tusnady GE, Cserzo M, Fiser A and Simon I (2003) Servers for sequence-structure relationship analysis and prediction. Nucleic Acids Res31, 3359-63. If.: 6.575
Tompa P, Tusnady GE, Friedrich P and Simon I (2002) The role of dimerization in prion replication. Biophys J82, 1711-8. If.: 4.643
Simon I, Fiser A and Tusnady GE (2001) Predicting protein conformation by statistical methods. Biochim Biophys Acta1549, 123-36. If.: 3.243
Tusnady GE and Simon I (2001) The HMMTOP transmembrane topology prediction server. Bioinformatics17, 849-50. If.: 3.421
Tompa P, Tusnady GE, Cserzo M and Simon I (2001) Prion protein: evolution caught en route. Proc Natl Acad Sci U S A98, 4431-6. If.: ---
Tusnady GE and Simon I (2001) Topology of membrane proteins. J Chem Inf Comput Sci41, 364-8. If.: ---
Bakos E, Evers R, Calenda G, Tusnady GE, Szakacs G, Varadi A and Sarkadi B (2000) Characterization of the amino-terminal regions in the human multidrug resistance J Cell Sci113 Pt 24, 4451-61. If.: ---
Bakos E, Evers R, Szakacs G, Tusnady GE, Welker E, Szabo K, de Haas M, van Deemter L, Borst P, Varadi A and Sarkadi B (1998) Functional multidrug resistance protein (MRP1) lacking the N-terminal J Biol Chem273, 32167-75. If.: 5.5
Tusnady GE and Simon I (1998) Principles governing amino acid composition of integral membrane proteins: J Mol Biol283, 489-506. If.: ---
Tusnady GE and Varadi A (1998) Short MRP may not be short. Biochem Biophys Res Commun242, 465-6. If.: 6.3
Tusnady GE, Bakos E, Varadi A and Sarkadi B (1997) Membrane topology distinguishes a subfamily of the ATP-binding cassette (ABC) FEBS Lett402, 1-3. If.: ---
Bakos E, Hegedus T, Hollo Z, Welker E, Tusnady GE, Zaman GJ, Flens MJ, Varadi A and Sarkadi B (1996) Membrane topology and glycosylation of the human multidrug resistance-associated J Biol Chem271, 12322-6. If.: ---
Tusnady GE, Tusnady G and Simon I (1995) Independence divergence-generated binary trees of amino acids. Protein Eng8, 417-23. If.: ---
Fiser A, Tusnady GE and Simon I (1994) Chaos game representation of protein structures. J Mol Graph12, 302-4, 295. If.: ---
