Membrane Protein Bioinformatics Research Group
Itt vagy: Közlemények

    Közlemények

  1. Dobson L, Szekeres LI, Gedán C, Langó T, Zeke A és Tusnády GE (2023) TmAlphaFold database: membrane localization and evaluation of AlphaFold2 predicted alpha-helical transmembrane protein structures Nucleic Acids Research , .
  2. Zeke A, Takács T, Sok P, Németh K, Kirsch K, Egri P, Póti ÁL, Bento I, Tusnády GE és Reményi A (2022) Structural insights into the pSer/pThr dependent regulation of the SHP2 tyrosine phosphatase in insulin and CD28 signaling Nature Communication 13, 5439.
  3. Bakos É, Németh O, Kucsma N, Tőkési N, Stieger B, Rushing E, Tőkés A, Kele P, Tusnády GE és Özvegy-Laczka Cs (2022) Cloning and characterization of a novel functional organic anion transporting polypeptide 3A1 isoform highly expressed in the human brain and testis Frontiers in Pharmacology 13, 958023.
  4. Dobson L és Tusnády GE (2021) MemDis: Predicting Disordered Regions in Transmembrane Proteins Int. J. Mol. Sci. 22, 12270.
  5. Czimer D, Porok K, Csete D, Gyüre Zs, Lavró V, Fülöp K, Chen Z, Gyergyák H, Tusnády GE, Burgess SM, Mócsai A, Váradi A és Varga M (2021) A New Zebrafish Model for Pseudoxanthoma Elasticum Front Cell Dev Biol 9, 628699.
  6. Dobson L, Zeke A és Tusnády GE (2021) PolarProtPred: Predicting apical and basolateral localization of transmembrane proteins using putative short linear motifs and deep learning. Bioinformatics , btab480. If.: ---
  7. Zeke A, Dobson L, Szekeres LI, Langó T és Tusnády GE (2021) PolarProtDb: A Database of Transmembrane and Secreted Proteins showing Apical-Basal Polarity J Mol Biol 433, 166705. If.: ---
  8. Tálas A, Huszár K, Kulcsár PI, Varga JK, Varga É, Tóth E, Welker Zs, Erdős G, Pach PF, Welker Á, Györgypál Z, Tusnády GE és Welker E (2021) A method for characterizing Cas9 variants via a one-million target sequence library of self-targeting sgRNAs Nucleic Acids Res 49, e31. If.: ---
  9. Kozák E, Szikora B, Iliás A, Jani PK, Hegyi Z, Matula Zs, Dedinszki D, Tőkési N, Fülöp K, Pomozi V, Várady Gy, Bakos É, Tusnády GE, Kacskovics I és Váradi A (2020) Creation of the first monoclonal antibody recognizing an extracellular epitope of hABCC6 FEBS Lett 595, 789-798. If.: ---
  10. Bakos É, Tusnády GE, Német O, Patik I, Magyar C, Németh K, Kele P és Özvegy- Laczka C (2020) Synergistic transport of a fluorescent coumarin probe marks coumarins as pharmacological modulators of Organic anion-transporting polypeptide, OATP3A1 Biochem Pharmacol. , .
  11. Langó T, Pataki ZG, Turiák L, Ács A, Varga JK, Várady, G, Kucsma, N, Drahos, L és Tusnády GE (2020) Partial Proteolysis Improves the Identification of the Extracellular Segments of Transmembrane Proteins by Surface Biotinylation Scientific Reports 10, 8880. If.: ---
  12. Csizmadia, G, Farkas, B, Katona, E, Tusnády, GE és Hegedűs, T (2020) Using MemBlob to Analyze Transmembrane Regions Based on Cryo-EM Maps. Methods Mol Biol. 2112, 123-30.
  13. Farkas, B, Csizmadia, G, Katona, E, Tusnady, GE és Hegedűs, T (2020) MemBlob database and server for identifying transmembrane regions using cryo-EM maps Bioinformatics 36, 2595-98. If.: ---
  14. Vargja, JK és Tusnady, GE (2019) The TMCrys server for supporting crystallization of transmembrane proteins. Bioinformatics 35, 4203-4. If.: 5.481
  15. Muller, A, Lango, T, Turiak, L, Acs, A, Varady, G, Kucsma, N, Drahos, L és Tusnady, GE (2019) Covalently modified carboxyl side chains on cell surface leads to a novel method toward topology analysis of transmembrane proteins Scientific Reports 9, 15729. If.: ---
  16. Dobson, L, Meszaros, B és Tusnady, GE (2018) Structural Principles Governing Disease Causing Germline Mutations. J Mol Biol S0022-2836, 31101-X. If.: ---
  17. Barath, D, Jaksa-Czotter, N, Molnar, J, Varga, T, Balassy, J, Szabo, LK, Kirilla, Z, Tusnady, GE, Preininger, E és Varallyay, E (2018) Small RNA NGS Revealed the Presence of Cherry Virus A and Little Cherry Virus 1 on Apricots in Hungary. Viruses 10, E318.
  18. Varga J és Tusnady, GE (2018) TMCrys: predict propensity of success for transmembrane protein crystallization. Bioinformatics , . If.: 5.481
  19. Fichó E, Reményi I, Simon I és Mészáros B (2017) MFIB: a repository of protein complexes with mutual folding induced by binding Bioinformatics 33, 3682-4. If.: 5.481
  20. Pipek O, Ribli D, Molnar J, Poti A, Krzystanek M, Bodor A, Tusnady GE, Szallas Z, Csabai I és Szuts D (2017) Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut. BMC Bioinformatics 18, 73. If.: 2.435
  21. Lango T, Rona G, Hunyadi-Gulyas E, Turiak L, Varga J, Dobson L, Varady Gy, Drahos L, Vertessy BG, Medzihradszky FK, Szakacs G és Tusnady GE (2017) Identification of extracellular segments by mass spectrometry improves topology prediction of transmembrane proteins Scientific Reports 7, 42610. If.: 5.228
  22. Varga J, Dobson L, Remenyi I és Tusnady GE (2017) TSTMP: target selection for structural genomics of human transmembrane proteins. Nucleic Acids Res 45, D325-330. If.: 9.202
  23. Szikriszt B, Poti A, Pipek O, Krzystanek M, Kanu N, Molnar J, Ribli D, Szeltner Z, Tusnady GE, Csabai I, Szallasi Z, Swanton C és Szuts D (2016) A comprehensive survey of the mutagenic impact of common cancer cytotoxics. Genome Biology 17, 99. If.: 11.313
  24. Varga J, Dobson L és Tusnady GE (2016) TOPDOM: database of conservatively located domains and motifs in proteins. Bioinformatics 32, 2725-2726. If.: 5.552
  25. Czotter N, Szabo E, Molnar J, Kocsis L, Deak T, Bisztray Gy, Tusnady GE, Burgyan J és Varallyay E (2016) FIRST DESCRIPTION OF GRAPEVINE SYRAH VIRUS 1 IN VINEYARDS OF HUNGARY Journal of Plant Pathology 1, 1. If.: ---
  26. Molnar J, Szakacs G és Tusnady GE (2016) Characterization of Disease-Associated Mutations in Human Transmembrane Proteins. PLoS One 11, e0151760. If.: 3.057
  27. Csernak E, Molnar J, Tusnady GE és Toth E (2016) Application of Targeted Next-generation Sequencing, TruSeq Custom Amplicon Assay for Molecular Pathology Diagnostics on Formalin-fixed and Paraffin-embedded Samples. Appl Immunohistochem Mol Morphol , . If.: 1.553
  28. Calcutt MJ, Szikriszt B, Poti A, Molnar J, Gervai JZ, Tusnady GE, Foecking MF és Szuts D (2015) Genome Sequence Analysis of Mycoplasma sp. HU2014, Isolated from Tissue Culture. Genome Announc 3, If.: ---
  29. Kozma D és Tusnady GE (2015) TMFoldWeb: a web server for predicting transmembrane protein fold class. Biol Direct 10, 54. If.: 3.016
  30. Tusnady GE, Dobson L és Tompa P (2015) Disordered regions in transmembrane proteins. Biochim Biophys Acta 1848, 2839-48. If.: 3.687
  31. Kozma D és Tusnady GE (2015) TMFoldRec: a statistical potential-based transmembrane protein fold recognition BMC Bioinformatics 16, 201. If.: 2.435
  32. Dobson L, Remenyi I és Tusnady GE (2015) The human transmembrane proteome. Biol Direct 10, 31. If.: 3.016
  33. Dobson L, Remenyi I és Tusnady GE (2015) CCTOP: a Consensus Constrained TOPology prediction web server. Nucleic Acids Res 43, W408-12. If.: 9.202
  34. Kiss K, Kucsma N, Brozik A, Tusnady GE, Bergam P, van Niel G és Szakacs G (2015) Role of the N-terminal transmembrane domain in the endo-lysosomal targeting and Biochem J 467, 127-39. If.: 3.562
  35. Dobson L, Lango T, Remenyi I és Tusnady GE (2015) Expediting topology data gathering for the TOPDB database. Nucleic Acids Res 43, D283-9. If.: 9.202
  36. Molnar J, Poti A, Pipek O, Krzystanek M, Kanu N, Swanton C, Tusnady GE, Szallasi Z, Csabai I és Szuts D (2014) The genome of the chicken DT40 bursal lymphoma cell line. G3 (Bethesda) 4, 2231-40. If.: 3.198
  37. Molnar J, Nagy T, Steger V, Toth G, Marincs F és Barta E (2014) Genome sequencing and analysis of Mangalica, a fatty local pig of Hungary. BMC Genomics 15, 761. If.: 4.3
  38. Kozma D, Simon I és Tusnady GE (2013) PDBTM: Protein Data Bank of transmembrane proteins after 8 years. Nucleic Acids Res 41, D524-9. If.: 8.808
  39. Fodor E, Zsigmond A, Horvath B, Molnar J, Nagy I, Toth G, Wilson SW és Varga M (2013) Full transcriptome analysis of early dorsoventral patterning in zebrafish. PLoS One 8, e70053. If.: 3.534
  40. Marincs F, Molnar J, Toth G, Steger V és Barta E (2013) Introgression and isolation contributed to the development of Hungarian Mangalica pigs from a particular European ancient bloodline. Genet Sel Evol 45, 22. If.: ---
  41. Molnar J, Toth G, Steger V, Zsolnai A, Janosi A, Mohr A, Szanto-Egesz R, Toth P, Micsinai A, Ratky J és Marincs F (2013) Mitochondrial D-loop analysis reveals low diversity in Mangalica pigs and their relationship to historical specimens. J Anim Breed Genet 130, 312-20. If.: ---
  42. Kozma D, Simon I és Tusnady GE (2012) CMWeb: an interactive on-line tool for analysing residue-residue contacts and Nucleic Acids Res 40, W329-33. If.: 8.278
  43. Tusnady GE és Simon I (2010) Topology prediction of helical transmembrane proteins: how far have we reached? Curr Protein Pept Sci 11, 550-61. If.: 3.83
  44. Steger V, Molnar A, Borsy A, Gyurjan I, Szabolcsi Z, Dancs G, Molnar J, Papp P, Nagy J, Puskas L, Barta E, Zomborszky Z, Horn P, Podani J, Semsey S, Lakatos P és Orosz L (2010) Antler development and coupled osteoporosis in the skeleton of red deer Cervus elaphus: expression dynamics for regulatory and effector genes. Mol Genet Genomics 284, 273-87. If.: ---
  45. Farrell KB, Tusnady GE és Eiden MV (2009) New structural arrangement of the extracellular regions of the phosphate J Biol Chem 284, 29979-87. If.: 8.2
  46. Varadi A, Tusnady GE, Bakos E és Sarkadi B (1998) Membrane topology of the human multidrug resistance-associated protein (MRP) and Cytotechnology 27, 71-9. If.: 0.616
  47. Tusnady GE, Kalmar L, Hegyi H, Tompa P és Simon I (2008) TOPDOM: database of domains and motifs with conservative location in Bioinformatics 24, 1469-70. If.: 4.328
  48. Aranyi T és Tusnady GE (2007) BiSearch: ePCR tool for native or bisulfite-treated genomic template. Methods Mol Biol 402, 385-402. If.: ---
  49. Tusnady GE, Kalmar L és Simon I (2008) TOPDB: topology data bank of transmembrane proteins. Nucleic Acids Res 36, D234-9. If.: 6.878
  50. Aranyi T, Varadi A, Simon I és Tusnady GE (2006) The BiSearch web server. BMC Bioinformatics 7, 431. If.: 3.617
  51. Tusnady GE, Sarkadi B, Simon I és Varadi A (2006) Membrane topology of human ABC proteins. FEBS Lett 580, 1017-22. If.: 7.7
  52. Magyar C, Gromiha MM, Pujadas G, Tusnady GE és Simon I (2005) SRide: a server for identifying stabilizing residues in proteins. Nucleic Acids Res 33, W303-5. If.: 7.552
  53. Tusnady GE, Simon I, Varadi A és Aranyi T (2005) BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes. Nucleic Acids Res 33, e9. If.: 7.552
  54. Tusnady GE, Dosztanyi Z és Simon I (2005) PDB_TM: selection and membrane localization of transmembrane proteins in the Nucleic Acids Res 33, D275-8. If.: 7.552
  55. Tusnady GE, Dosztanyi Z és Simon I (2005) TMDET: web server for detecting transmembrane regions of proteins by using their Bioinformatics 21, 1276-7. If.: 6.019
  56. Tusnady GE, Dosztanyi Z és Simon I (2004) Transmembrane proteins in the Protein Data Bank: identification and Bioinformatics 20, 2964-72. If.: 5.742
  57. Gardy JL, Spencer C, Wang K, Ester M, Tusnady GE, Simon I, Hua S, deFays K, Lambert C, Nakai K és Brinkman FS (2003) PSORT-B: Improving protein subcellular localization prediction for Gram-negative Nucleic Acids Res 31, 3613-7. If.: 6.575
  58. Dosztanyi Z, Magyar C, Tusnady GE, Cserzo M, Fiser A és Simon I (2003) Servers for sequence-structure relationship analysis and prediction. Nucleic Acids Res 31, 3359-63. If.: 6.575
  59. Tompa P, Tusnady GE, Friedrich P és Simon I (2002) The role of dimerization in prion replication. Biophys J 82, 1711-8. If.: 4.643
  60. Simon I, Fiser A és Tusnady GE (2001) Predicting protein conformation by statistical methods. Biochim Biophys Acta 1549, 123-36. If.: 3.243
  61. Tusnady GE és Simon I (2001) The HMMTOP transmembrane topology prediction server. Bioinformatics 17, 849-50. If.: 3.421
  62. Tompa P, Tusnady GE, Cserzo M és Simon I (2001) Prion protein: evolution caught en route. Proc Natl Acad Sci U S A 98, 4431-6. If.: ---
  63. Tusnady GE és Simon I (2001) Topology of membrane proteins. J Chem Inf Comput Sci 41, 364-8. If.: ---
  64. Bakos E, Evers R, Calenda G, Tusnady GE, Szakacs G, Varadi A és Sarkadi B (2000) Characterization of the amino-terminal regions in the human multidrug resistance J Cell Sci 113 Pt 24, 4451-61. If.: ---
  65. Bakos E, Evers R, Szakacs G, Tusnady GE, Welker E, Szabo K, de Haas M, van Deemter L, Borst P, Varadi A és Sarkadi B (1998) Functional multidrug resistance protein (MRP1) lacking the N-terminal J Biol Chem 273, 32167-75. If.: 5.5
  66. Tusnady GE és Simon I (1998) Principles governing amino acid composition of integral membrane proteins: J Mol Biol 283, 489-506. If.: ---
  67. Tusnady GE és Varadi A (1998) Short MRP may not be short. Biochem Biophys Res Commun 242, 465-6. If.: 6.3
  68. Tusnady GE, Bakos E, Varadi A és Sarkadi B (1997) Membrane topology distinguishes a subfamily of the ATP-binding cassette (ABC) FEBS Lett 402, 1-3. If.: ---
  69. Bakos E, Hegedus T, Hollo Z, Welker E, Tusnady GE, Zaman GJ, Flens MJ, Varadi A és Sarkadi B (1996) Membrane topology and glycosylation of the human multidrug resistance-associated J Biol Chem 271, 12322-6. If.: ---
  70. Tusnady GE, Tusnady G és Simon I (1995) Independence divergence-generated binary trees of amino acids. Protein Eng 8, 417-23. If.: ---
  71. Fiser A, Tusnady GE és Simon I (1994) Chaos game representation of protein structures. J Mol Graph 12, 302-4, 295. If.: ---
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